3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UUAAG*CGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_249 not in the Motif Atlas
Homologous match to IL_7RQB_016
Geometric discrepancy: 0.0647
The information below is about IL_7RQB_016
Detailed Annotation
AAA cross-strand stack
Broad Annotation
AAA cross-strand stack
Motif group
IL_17136.1
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
24

Unit IDs

5DFE|1|YA|U|606
5DFE|1|YA|U|607
5DFE|1|YA|A|608
5DFE|1|YA|A|609
5DFE|1|YA|G|610
*
5DFE|1|YA|C|618
5DFE|1|YA|G|619
5DFE|1|YA|G|620
5DFE|1|YA|A|621
5DFE|1|YA|G|622

Current chains

Chain YA
T23S rRNA

Nearby chains

Chain YF
50S ribosomal protein L4
Chain YP
50S ribosomal protein L15

Coloring options:


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