IL_5DFE_251

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5DFE|1|YA|G|801, 5DFE|1|YA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_251 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0411

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5DFE|1|YA|G|674
5DFE|1|YA|A|675
5DFE|1|YA|A|676
5DFE|1|YA|A|677
5DFE|1|YA|C|678
*
5DFE|1|YA|G|799
5DFE|1|YA|A|800
5DFE|1|YA|G|801
5DFE|1|YA|A|802
5DFE|1|YA|U|803
5DFE|1|YA|A|804
5DFE|1|YA|G|805
5DFE|1|YA|C|806

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15