IL_5DFE_273
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 5DFE|1|YA|U|1026, 5DFE|1|YA|A|1127, 5DFE|1|YA|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DFE_273 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0525
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
5DFE|1|YA|G|1024
5DFE|1|YA|G|1025
5DFE|1|YA|U|1026
5DFE|1|YA|A|1027
5DFE|1|YA|A|1028
5DFE|1|YA|A|1029
5DFE|1|YA|G|1030
*
5DFE|1|YA|C|1124
5DFE|1|YA|G|1125
5DFE|1|YA|A|1126
5DFE|1|YA|A|1127
5DFE|1|YA|A|1128
5DFE|1|YA|A|1129
5DFE|1|YA|U|1130
5DFE|1|YA|G|1131
5DFE|1|YA|A|1132
5DFE|1|YA|U|1133
5DFE|1|YA|C|1135
5DFE|1|YA|G|1136
5DFE|1|YA|G|1137
5DFE|1|YA|G|1138
5DFE|1|YA|G|1139
5DFE|1|YA|C|1140
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain Y9
- 50S ribosomal protein L36
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
- Chain YQ
- 50S ribosomal protein L16
Coloring options: