IL_5DFE_287

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

5DFE|1|YA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_287 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.0727

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

5DFE|1|YA|C|1417
5DFE|1|YA|G|1418
5DFE|1|YA|A|1419
5DFE|1|YA|U|1420
5DFE|1|YA|G|1421
*
5DFE|1|YA|C|1577
5DFE|1|YA|U|1578
5DFE|1|YA|A|1579
5DFE|1|YA|A|1580
5DFE|1|YA|G|1581

Current chains

Chain YA

T23S rRNA

Nearby chains