IL_5DFE_304

3D structure

PDB id

5DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

5DFE|1|YA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DFE_304 not in the Motif Atlas

Homologous match to IL_7RQB_072

Geometric discrepancy: 0.0642

The information below is about IL_7RQB_072

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_16396.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5DFE|1|YA|U|1841
5DFE|1|YA|G|1842
*
5DFE|1|YA|U|1898
5DFE|1|YA|G|1899
5DFE|1|YA|A|1900
5DFE|1|YA|A|1901

Current chains

Chain YA

T23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2