IL_16396.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_1NTA_001	1NTA	0.3283	1	Stack outside cWW	B+A	RNA (18-mer)	G	114	G	115	*	C	5	C	7	cWW	cWW
2	IL_1R3E_001	1R3E	0.3756	3	Multiple bulged bases	E+D	RNA (17-mer)	C	415	C	416	*	G	408	G	412	cWW	cWW
3	IL_1U9S_008	1U9S	0.3279	1	Stack outside cWW	A	RIBONUCLEASE P	G	195	C	196	*	G	217	C	219	cWW	cWW
4	IL_7L0Z_004	7L0Z	0.3050	2	Stack outside cWW	G	RNA (69-MER)	C	23	C	24	*	G	41	G	44	cWW	cWW
5	IL_4KZD_006	4KZD	0.2316	2	Stack outside cWW	R	RNA (84-MER)	C	30	C	31	*	G	49	G	52	cWW	cWW
6	IL_5LYS_006	5LYS	0.1732	2	Stack outside cWW	B	7SK RNA	C	36	C	37	*	G	70	G	73	cWW	cWW
7	IL_387D_001	387D	0.0000	2	Multiple bulged bases	A	RNA Pseudoknot	U	1	C	2	*	G	15	A	18	cWW	cWW
8	IL_6IV9_001	6IV9	0.2341	2	Multiple bulged bases	B	crRNA (50-MER)	A	-29	C	-28	*	G	-9	U	-6	cWW	cWW
9	IL_3MXH_004	3MXH	0.1936	2	Multiple bulged bases	R	c-di-GMP riboswitch	G	56	G	57	*	U	81	C	84	cWW	cWW
10	IL_7MLW_005	7MLW	0.1925	1	Stack outside cWW	F	Guanidine-I riboswitch	G	17	G	18	*	U	43	C	45	cWW	cWW
11	IL_1FUF_003	1FUF	0.2029	2	Multiple bulged bases	A+B	RNA (14-mer)	G	9	G	10	*	U	19	C	22	cWW	cWW
12	IL_1FUF_002	1FUF	0.1923	2	Multiple bulged bases	B+A	RNA (14-mer)	G	23	G	24	*	U	5	C	8	cWW	cWW
13	IL_6CF2_002	6CF2	0.2142	2	Major groove intercalation	G	RNA (35-MER)	C	10	G	11	*	C	22	G	25	cWW	cWW
14	IL_6DLR_004	6DLR	0.2241	2	Multiple bulged bases	A	Guanidine-I riboswitch	G	22	C	23	*	G	36	C	39	cWW	cWW
15	IL_6XH2_001	6XH2	0.2241	3	Major groove intercalation	D	TRANS-ACTIVATION RESPONSE ELEMENT	C	39	U	40	*	A	22	G	26	cWW	cWW
16	IL_1XOK_001	1XOK	0.2195	2	Major groove intercalation	A	alfalfa mosaic virus RNA 3' UTR	C	846	U	847	*	A	864	G	867	cWW	cWW
17	IL_1XOK_002	1XOK	0.2228	2	Major groove intercalation	A+B	alfalfa mosaic virus RNA 3' UTR	C	868	C	869	*	G	877	G	880	cWW	cWW
18	IL_5T83_004	5T83	0.2472	2	Multiple bulged bases	A	Guanidine-I riboswitch	G	22	C	23	*	G	33	C	36	cWW	cWW
19	IL_5LYS_007	5LYS	0.2022	2	Major groove intercalation	B	7SK RNA	C	67	U	68	*	A	39	G	42	cWW	cWW
20	IL_5WTK_001	5WTK	0.1697	2	Multiple bulged bases	B	RNA (58-MER)	A	3	C	4	*	G	20	U	23	cWW	cWW
21	IL_7OS0_002	7OS0	0.1471	2	Multiple bulged bases	F	crRNA	A	11	C	12	*	G	29	U	32	cWW	cWW
22	IL_7OAX_001	7OAX	0.3303	1	Stack outside cWW	A	Chili RNA Aptamer	C	44	G	45	*	U	8	G	10	cWW	cWW
23	IL_6CZR_119	6CZR	0.2797	2	Multiple bulged bases	1a	SSU rRNA	G	227	G	228	*	U	123	C	126	cWW	cWW
24	IL_4LFB_007	4LFB	0.2562	2	Multiple bulged bases	A	SSU rRNA	G	231	G	232	*	U	129	C	131	cWW	cWW
25	IL_7A0S_067	7A0S	0.4664	2	Major groove intercalation	X	LSU rRNA	U	1833	G	1834	*	U	1881	A	1884	cWW	cWW
26	IL_3IWN_004	3IWN	0.1901	2	Multiple bulged bases	A	C-di-GMP riboswitch	G	46	G	47	*	U	76	C	79	cWW	cWW
27	IL_7RQB_072	7RQB	0.2846	2	Major groove intercalation	1A	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
28	IL_5J7L_315	5J7L	0.2146	2	Major groove intercalation	DA	LSU rRNA	U	1841	G	1842	*	U	1898	A	1901	cWW	cWW
29	IL_4V9F_067	4V9F	0.2326	2	Major groove intercalation	0	LSU rRNA	U	1897	G	1898	*	U	1939	A	1942	cWW	cWW
30	IL_6JQ6_004	6JQ6	0.3471	1	Stack outside cWW	U	RNA (81-MER)	G	31	G	32	*	U	62	C	64	cWW	cWW
31	IL_8C3A_090	8C3A	0.2525	2	Multiple bulged bases	1	LSU rRNA	U	2178	G	2179	*	U	2219	A	2222	cWW	cWW
32	IL_5TBW_085	5TBW	0.2397	2	Major groove intercalation	1	LSU rRNA	U	2200	G	2201	*	U	2241	A	2244	cWW	cWW
33	IL_4WF9_106	4WF9	0.4034	1	Major groove intercalation	X	LSU rRNA	G	2858	G	2859	*	U	2898	C	2900	cWW	cWW
34	IL_5J7L_352	5J7L	0.4169	1	Major groove intercalation	DA	LSU rRNA	G	2838	G	2839	*	U	2878	C	2880	cWW	cWW
35	IL_5WT1_001	5WT1	0.3273	1	Stack outside cWW	C	tRNA	A	26	C	27	*	G	43	U	45	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UG*UAAA	3
CC*GUUG	2
GG*UAGC	2
GG*UGC	2
GG*UUUC	2
AC*GACU	2
GG*UGAC	2
UG*UGAA	2
GG*UAC	2
GG*CGC	1
CC*GUUCG	1
GC*GGC	1
CC*GCUG	1
UC*GGAA	1
AC*GUCU	1
CG*CUGG	1
GC*GGAC	1
CU*AUCUG	1
CU*AAUG	1
CC*GAUG	1
GC*GGUC	1
CU*AUUG	1
CG*UGG	1
UG*UCAA	1
AC*GGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
*G	6
*GA	6
*UU	5
*AA	3
*AG	2
*AU	2
*AC	2
*A	2
*UUC	1
*CU	1
*UC	1
*UG	1
*UCU	1
*GU	1
*CA	1

Release history

Release	3.80	3.81	3.82	3.83	3.84	3.85	3.86
Date	2024-01-31	2024-02-28	2024-03-27	2024-04-24	2024-05-22	2024-06-19	2024-07-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_16396.2 Version IL_16396.2 of this group appears in releases 3.80 to 3.86 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_16396.2 Version IL_16396.2 of this group appears in releases 3.80 to 3.86

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Csv

Json