3D structure

PDB id
5DFE (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex containing E. coli RF2
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5DFE_318 not in the Motif Atlas
Homologous match to IL_7RQB_086
Geometric discrepancy: 0.1982
The information below is about IL_7RQB_086
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5DFE|1|YA|G|2124
5DFE|1|YA|G|2125
5DFE|1|YA|A|2126
5DFE|1|YA|G|2127
*
5DFE|1|YA|C|2161
5DFE|1|YA|G|2162
5DFE|1|YA|C|2163
5DFE|1|YA|C|2164
5DFE|1|YA|G|2165
5DFE|1|YA|G|2166
5DFE|1|YA|U|2167
5DFE|1|YA|G|2168
5DFE|1|YA|A|2169
5DFE|1|YA|A|2170
5DFE|1|YA|A|2171
5DFE|1|YA|U|2172
5DFE|1|YA|A|2173
5DFE|1|YA|C|2174

Current chains

Chain YA
T23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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