IL_5DFE_334
3D structure
- PDB id
- 5DFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex containing E. coli RF2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5DFE|1|YA|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DFE_334 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.0281
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
5DFE|1|YA|U|2636
5DFE|1|YA|U|2637
5DFE|1|YA|G|2638
5DFE|1|YA|A|2639
5DFE|1|YA|G|2640
*
5DFE|1|YA|C|2774
5DFE|1|YA|A|2775
5DFE|1|YA|A|2776
5DFE|1|YA|G|2777
5DFE|1|YA|A|2778
5DFE|1|YA|U|2779
5DFE|1|YA|G|2780
5DFE|1|YA|A|2781
5DFE|1|YA|G|2782
Current chains
- Chain YA
- T23S rRNA
Nearby chains
- Chain YE
- 50S ribosomal protein L3
- Chain YN
- 50S ribosomal protein L13
Coloring options: