IL_5DGE_137

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

5DGE|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_137 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1108

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

5DGE|1|2|U|37
5DGE|1|2|C|38
5DGE|1|2|A|39
5DGE|1|2|A|40
5DGE|1|2|A|41
*
5DGE|1|2|U|466
5DGE|1|2|G|467
5DGE|1|2|A|468
5DGE|1|2|C|469
5DGE|1|2|A|470
5DGE|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A