IL_5DGE_155

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

5DGE|1|2|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_155 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1132

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

5DGE|1|2|G|363
5DGE|1|2|G|364
5DGE|1|2|G|365
*
5DGE|1|2|C|376
5DGE|1|2|G|377
5DGE|1|2|A|378
5DGE|1|2|U|379
5DGE|1|2|U|380
5DGE|1|2|C|381

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain S4

40S ribosomal protein S4-A

Chain S9

40S ribosomal protein S9-A