IL_5DGE_331
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GG*CC
- Length
- 4 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGE_331 not in the Motif Atlas
- Geometric match to IL_8C3A_142
- Geometric discrepancy: 0.1756
- The information below is about IL_8C3A_142
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
5DGE|1|5|G|2619
5DGE|1|5|G|2620
*
5DGE|1|C|C|74
5DGE|1|C|C|75
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain C
- DNA (5'-R(*CP*CP*(NA))-3')
Nearby chains
- Chain f
- Eukaryotic translation initiation factor 5A-1
- Chain m0
- 60S ribosomal protein L10
- Chain n9
- 60S ribosomal protein L29
Coloring options: