IL_5DGE_355

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACAC*GCGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_355 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2476

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5DGE|1|5|A|3163
5DGE|1|5|C|3164
5DGE|1|5|A|3165
5DGE|1|5|C|3166
*
5DGE|1|5|G|3284
5DGE|1|5|C|3285
5DGE|1|5|G|3286
5DGE|1|5|U|3287

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m7

60S ribosomal protein L17-A