IL_5DGE_396

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_396 not in the Motif Atlas

Homologous match to IL_4V88_413

Geometric discrepancy: 0.0776

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5DGE|1|6|A|550
5DGE|1|6|G|551
5DGE|1|6|G|552
5DGE|1|6|G|553
5DGE|1|6|C|554
5DGE|1|6|A|555
5DGE|1|6|A|556
5DGE|1|6|G|557
*
5DGE|1|6|C|587
5DGE|1|6|U|588

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A