IL_5DGE_403

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_403 not in the Motif Atlas

Homologous match to IL_4V88_421

Geometric discrepancy: 0.1056

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5DGE|1|6|G|703
5DGE|1|6|C|704
5DGE|1|6|U|705
5DGE|1|6|A|706
5DGE|1|6|A|707
5DGE|1|6|C|708
*
5DGE|1|6|G|730
5DGE|1|6|C|731
5DGE|1|6|G|732
5DGE|1|6|A|733
5DGE|1|6|A|734
5DGE|1|6|C|735

Current chains

Chain 6

18S ribosomal RNA

Nearby chains