IL_5DGE_437

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

5DGE|1|6|U|1370, 5DGE|1|6|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_437 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.3419

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

5DGE|1|6|G|1352
5DGE|1|6|U|1353
5DGE|1|6|G|1354
5DGE|1|6|C|1355
*
5DGE|1|6|G|1368
5DGE|1|6|U|1369
5DGE|1|6|U|1370
5DGE|1|6|A|1371
5DGE|1|6|U|1372
5DGE|1|6|C|1373

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A