IL_5DGE_465
3D structure
- PDB id
- 5DGE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GCGAAUG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 5DGE|1|1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGE_465 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2502
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5DGE|1|1|G|999
5DGE|1|1|C|1000
5DGE|1|1|G|1001
5DGE|1|1|A|1002
5DGE|1|1|A|1003
5DGE|1|1|U|1004
5DGE|1|1|G|1005
*
5DGE|1|1|C|1045
5DGE|1|1|A|1046
5DGE|1|1|A|1047
5DGE|1|1|A|1048
5DGE|1|1|C|1049
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain L5
- 60S ribosomal protein L5
- Chain M0
- 60S ribosomal protein L10
- Chain N1
- 60S ribosomal protein L21-A
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