IL_5DGE_471

3D structure

PDB id

5DGE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UCUG*CGG

Length

7 nucleotides

Bulged bases

5DGE|1|1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGE_471 not in the Motif Atlas

Geometric match to IL_8VTW_044

Geometric discrepancy: 0.2965

The information below is about IL_8VTW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

5DGE|1|1|U|2203
5DGE|1|1|C|2204
5DGE|1|1|U|2205
5DGE|1|1|G|2206
*
5DGE|1|1|C|2237
5DGE|1|1|G|2238
5DGE|1|1|G|2239

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain L2

60S ribosomal protein L2-A