IL_5DGF_286

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

5DGF|1|5|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_286 not in the Motif Atlas

Geometric match to IL_4V9F_043

Geometric discrepancy: 0.24

The information below is about IL_4V9F_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

5DGF|1|5|G|1234
5DGF|1|5|U|1235
5DGF|1|5|G|1236
5DGF|1|5|G|1237
5DGF|1|5|C|1238
*
5DGF|1|5|G|1250
5DGF|1|5|A|1251
5DGF|1|5|A|1252
5DGF|1|5|U|1253
5DGF|1|5|C|1254

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S ribosomal protein L12-A (uL11)

Chain p0

60S acidic ribosomal protein P0