IL_5DGF_403

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUUG*CUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_403 not in the Motif Atlas

Homologous match to IL_4V88_422

Geometric discrepancy: 0.1835

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5DGF|1|6|C|708
5DGF|1|6|C|709
5DGF|1|6|U|710
5DGF|1|6|U|711
5DGF|1|6|G|712
*
5DGF|1|6|C|726
5DGF|1|6|U|727
5DGF|1|6|U|728
5DGF|1|6|G|729
5DGF|1|6|G|730

Current chains

Chain 6

18S ribosomal RNA

Nearby chains