IL_5DGF_473

3D structure

PDB id

5DGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAG*UUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGF_473 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2521

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5DGF|1|1|G|3345
5DGF|1|1|U|3346
5DGF|1|1|A|3347
5DGF|1|1|G|3348
*
5DGF|1|1|U|3357
5DGF|1|1|U|3358
5DGF|1|1|A|3359
5DGF|1|1|C|3360

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N2

60S ribosomal protein L22-A

Chain S8

40S ribosomal protein S8-A