IL_5DGV_098

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GG*CC

Length

4 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_098 not in the Motif Atlas

Geometric match to IL_8C3A_142

Geometric discrepancy: 0.2281

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

5DGV|1|1|G|2619
5DGV|1|1|G|2620
*
5DGV|1|C|C|74
5DGV|1|C|C|75

Current chains

Chain 1

25S ribosomal RNA

Chain C

DNA (5'-R(*CP*CP*(8AN)*(Pro)*(Pro))-3')

Nearby chains

Chain M0

60S ribosomal protein L10

Chain N9

60S ribosomal protein L29