IL_5DGV_186
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_186 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1374
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
5DGV|1|2|G|1041
5DGV|1|2|G|1042
5DGV|1|2|A|1043
5DGV|1|2|U|1044
*
5DGV|1|2|G|1074
5DGV|1|2|C|1075
5DGV|1|2|A|1076
5DGV|1|2|C|1077
Current chains
- Chain 2
- Saccharomyces cerevisiae S288c RDN37-1 miscRNA
Nearby chains
- Chain C3
- 40S ribosomal protein S13
- Chain D6
- 40S ribosomal protein S26-B
- Chain S0
- 40S ribosomal protein S0-A
- Chain S1
- 40S ribosomal protein S1-A
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