IL_5DGV_188

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_188 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.0707

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

5DGV|1|2|G|1111
5DGV|1|2|G|1112
5DGV|1|2|A|1113
5DGV|1|2|G|1114
5DGV|1|2|U|1115
5DGV|1|2|A|1116
5DGV|1|2|U|1117
5DGV|1|2|G|1118
*
5DGV|1|2|U|1129
5DGV|1|2|G|1130
5DGV|1|2|A|1131
5DGV|1|2|A|1132
5DGV|1|2|A|1133
5DGV|1|2|C|1134

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain Q1

60S ribosomal protein L41-A