IL_5DGV_213

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_213 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1252

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5DGV|1|2|G|1638
5DGV|1|2|C|1639
5DGV|1|2|C|1640
5DGV|1|2|C|1641
*
5DGV|1|2|G|1760
5DGV|1|2|U|1761
5DGV|1|2|A|1762
5DGV|1|2|A|1763
5DGV|1|2|C|1764

Current chains

Chain 2

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain Q1

60S ribosomal protein L41-A

Chain SM

Suppressor protein STM1