IL_5DGV_243

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_243 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.2762

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

5DGV|1|5|C|163
5DGV|1|5|A|164
5DGV|1|5|A|165
5DGV|1|5|C|166
*
5DGV|1|5|G|256
5DGV|1|5|U|257
5DGV|1|5|G|258

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m3

60S ribosomal protein L13-A

Chain o5

60S ribosomal protein L35-A