IL_5DGV_354

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACACA*UGCGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_354 not in the Motif Atlas

Homologous match to IL_5TBW_121

Geometric discrepancy: 0.2959

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

5DGV|1|5|A|3163
5DGV|1|5|C|3164
5DGV|1|5|A|3165
5DGV|1|5|C|3166
5DGV|1|5|A|3167
*
5DGV|1|5|U|3283
5DGV|1|5|G|3284
5DGV|1|5|C|3285
5DGV|1|5|G|3286
5DGV|1|5|U|3287

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o3

60S ribosomal protein L33-A