IL_5DGV_357
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 5DGV|1|5|A|3180, 5DGV|1|5|A|3186, 5DGV|1|5|U|3207, 5DGV|1|5|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_357 not in the Motif Atlas
- Homologous match to IL_5TBW_124
- Geometric discrepancy: 0.067
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5DGV|1|5|U|3179
5DGV|1|5|A|3180
5DGV|1|5|C|3181
5DGV|1|5|G|3182
5DGV|1|5|A|3183
5DGV|1|5|A|3184
5DGV|1|5|U|3185
5DGV|1|5|A|3186
5DGV|1|5|A|3187
5DGV|1|5|G|3188
*
5DGV|1|5|C|3204
5DGV|1|5|G|3205
5DGV|1|5|C|3206
5DGV|1|5|U|3207
5DGV|1|5|G|3208
5DGV|1|5|A|3209
5DGV|1|5|A|3210
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l6
- 60S ribosomal protein L6-A
- Chain l9
- 60S ribosomal protein L9-A
- Chain m4
- 60S ribosomal protein L14-A
- Chain m6
- 60S ribosomal protein L16-A
- Chain n0
- 60S ribosomal protein L20-A
Coloring options: