IL_5DGV_376

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_376 not in the Motif Atlas

Homologous match to IL_4V88_391

Geometric discrepancy: 0.0539

The information below is about IL_4V88_391

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5DGV|1|6|G|109
5DGV|1|6|U|110
5DGV|1|6|U|111
5DGV|1|6|A|112
*
5DGV|1|6|U|302
5DGV|1|6|U|303
5DGV|1|6|U|304
5DGV|1|6|C|305

Current chains

Chain 6

Saccharomyces cerevisiae S288c RDN37-1 miscRNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A