IL_5DGV_470
3D structure
- PDB id
- 5DGV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUAU*AUGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DGV_470 not in the Motif Atlas
- Geometric match to IL_1J2B_001
- Geometric discrepancy: 0.3844
- The information below is about IL_1J2B_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36661.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
5DGV|1|1|G|1618
5DGV|1|1|A|1619
5DGV|1|1|U|1620
5DGV|1|1|A|1621
5DGV|1|1|U|1622
*
5DGV|1|1|A|1823
5DGV|1|1|U|1824
5DGV|1|1|G|1825
5DGV|1|1|C|1826
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain O4
- 60S ribosomal protein L34-A
- Chain O8
- 60S ribosomal protein L38
Coloring options: