IL_5DGV_488

3D structure

PDB id

5DGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CACA*UGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DGV_488 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2555

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5DGV|1|5|C|3164
5DGV|1|5|A|3165
5DGV|1|5|C|3166
5DGV|1|5|A|3167
*
5DGV|1|5|U|3283
5DGV|1|5|G|3284
5DGV|1|5|C|3285
5DGV|1|5|G|3286

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain o3

60S ribosomal protein L33-A