IL_5DM6_027

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_027 not in the Motif Atlas

Homologous match to IL_7A0S_026

Geometric discrepancy: 0.1167

The information below is about IL_7A0S_026

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5DM6|1|X|C|851
5DM6|1|X|A|852
5DM6|1|X|U|853
*
5DM6|1|X|A|925
5DM6|1|X|C|926
5DM6|1|X|G|927

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L27

Chain W

50S ribosomal protein L30