IL_5DM6_037

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

5DM6|1|X|C|1141, 5DM6|1|X|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_037 not in the Motif Atlas

Geometric match to IL_7RQB_039

Geometric discrepancy: 0.2086

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5DM6|1|X|C|1018
5DM6|1|X|U|1019
5DM6|1|X|C|1020
5DM6|1|X|A|1021
5DM6|1|X|G|1022
5DM6|1|X|U|1023
5DM6|1|X|G|1024
*
5DM6|1|X|C|1139
5DM6|1|X|U|1140
5DM6|1|X|C|1141
5DM6|1|X|A|1142
5DM6|1|X|A|1143
5DM6|1|X|G|1144

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13