IL_5DM6_048
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM6_048 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0728
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
5DM6|1|X|A|1262
5DM6|1|X|U|1263
5DM6|1|X|G|1264
5DM6|1|X|A|1265
5DM6|1|X|G|1266
5DM6|1|X|U|1267
5DM6|1|X|A|1268
5DM6|1|X|A|1269
*
5DM6|1|X|U|2011
5DM6|1|X|G|2012
5DM6|1|X|A|2013
5DM6|1|X|A|2014
5DM6|1|X|A|2015
5DM6|1|X|U|2016
5DM6|1|X|U|2017
Current chains
- Chain X
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain N
- 50S ribosomal protein L20
- Chain P
- 50S ribosomal protein L22
- Chain Z
- 50S ribosomal protein L32
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