IL_5DM6_076

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5DM6|1|X|A|1938, 5DM6|1|X|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_076 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1342

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

5DM6|1|X|C|1934
5DM6|1|X|G|1935
5DM6|1|X|A|1936
5DM6|1|X|A|1937
5DM6|1|X|A|1938
5DM6|1|X|U|1939
5DM6|1|X|U|1940
5DM6|1|X|C|1941
5DM6|1|X|C|1942
5DM6|1|X|U|1943
5DM6|1|X|U|1944
5DM6|1|X|G|1945
*
5DM6|1|X|C|1961
5DM6|1|X|C|1962
5DM6|1|X|U|1963
5DM6|1|X|G|1964

Current chains

Chain X

23S ribosomal RNA

Nearby chains