IL_5DM6_084

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

5DM6|1|X|C|2111, 5DM6|1|X|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|G|2110
5DM6|1|X|C|2111
5DM6|1|X|G|2112
5DM6|1|X|U|2113
5DM6|1|X|A|2114
5DM6|1|X|G|2115
5DM6|1|X|G|2116
5DM6|1|X|A|2117
5DM6|1|X|U|2118
5DM6|1|X|A|2119
5DM6|1|X|G|2120
*
5DM6|1|X|C|2178
5DM6|1|X|C|2179

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L1