IL_5DM6_086

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAG*CAACGGUGAAAUACC

Length

20 nucleotides

Bulged bases

5DM6|1|X|A|2169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|G|2123
5DM6|1|X|G|2124
5DM6|1|X|G|2125
5DM6|1|X|A|2126
5DM6|1|X|G|2127
*
5DM6|1|X|C|2161
5DM6|1|X|A|2162
5DM6|1|X|A|2163
5DM6|1|X|C|2164
5DM6|1|X|G|2165
5DM6|1|X|G|2166
5DM6|1|X|U|2167
5DM6|1|X|G|2168
5DM6|1|X|A|2169
5DM6|1|X|A|2170
5DM6|1|X|A|2171
5DM6|1|X|U|2172
5DM6|1|X|A|2173
5DM6|1|X|C|2174
5DM6|1|X|C|2175

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L1