IL_5DM6_091

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_091 not in the Motif Atlas

Homologous match to IL_7RQB_089

Geometric discrepancy: 0.0946

The information below is about IL_7RQB_089

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.10

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

33

Unit IDs

5DM6|1|X|C|2350
5DM6|1|X|G|2351
5DM6|1|X|A|2352
5DM6|1|X|G|2353
*
5DM6|1|X|C|2364
5DM6|1|X|G|2365
5DM6|1|X|A|2366
5DM6|1|X|G|2367

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain T

50S ribosomal protein L27