IL_5DM6_101

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

5DM6|1|X|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_101 not in the Motif Atlas

Homologous match to IL_7A0S_091

Geometric discrepancy: 0.0837

The information below is about IL_7A0S_091

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_94991.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

15

Unit IDs

5DM6|1|X|U|2522
5DM6|1|X|G|2523
*
5DM6|1|X|C|2540
5DM6|1|X|A|2541
5DM6|1|X|A|2542
5DM6|1|X|G|2543

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13