IL_5DM6_105

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCGCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_105 not in the Motif Atlas

Homologous match to IL_7A0S_095

Geometric discrepancy: 0.0975

The information below is about IL_7A0S_095

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

5DM6|1|X|C|2680
5DM6|1|X|C|2681
5DM6|1|X|G|2682
5DM6|1|X|C|2683
5DM6|1|X|U|2684
*
5DM6|1|X|A|2725
5DM6|1|X|U|2726
5DM6|1|X|G|2727

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19