IL_5DM6_107

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CU*ACAUG

Length

7 nucleotides

Bulged bases

5DM6|1|X|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM6_107 not in the Motif Atlas

Homologous match to IL_7A0S_097

Geometric discrepancy: 0.0914

The information below is about IL_7A0S_097

Detailed Annotation

Multiple bulged bases

Broad Annotation

Multiple bulged bases

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

5DM6|1|X|C|2695
5DM6|1|X|U|2696
*
5DM6|1|X|A|2711
5DM6|1|X|C|2712
5DM6|1|X|A|2712|||A
5DM6|1|X|U|2713
5DM6|1|X|G|2714

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain M

50S ribosomal protein L19