IL_5DM6_116
3D structure
- PDB id
- 5DM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAUGAUAC*GAAAAGUCG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15568.1
- Basepair signature
- cWW-tSH-tHW-bif-L-R-bif-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
5DM6|1|Y|C|73
5DM6|1|Y|A|74
5DM6|1|Y|A|75
5DM6|1|Y|U|76
5DM6|1|Y|G|77
5DM6|1|Y|A|78
5DM6|1|Y|U|79
5DM6|1|Y|A|80
5DM6|1|Y|C|81
*
5DM6|1|Y|G|100
5DM6|1|Y|A|101
5DM6|1|Y|A|102
5DM6|1|Y|A|103
5DM6|1|Y|A|104
5DM6|1|Y|G|105
5DM6|1|Y|U|106
5DM6|1|Y|C|107
5DM6|1|Y|G|108
Current chains
- Chain Y
- 5S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain W
- 50S ribosomal protein L30
- Chain X
- Large subunit ribosomal RNA; LSU rRNA
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