IL_5DM6_120

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCCCUAAAUG*CUA

Length

13 nucleotides

Bulged bases

5DM6|1|X|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|U|1004
5DM6|1|X|C|1005
5DM6|1|X|C|1006
5DM6|1|X|C|1007
5DM6|1|X|U|1008
5DM6|1|X|A|1009
5DM6|1|X|A|1010
5DM6|1|X|A|1011
5DM6|1|X|U|1012
5DM6|1|X|G|1013
*
5DM6|1|X|C|1149
5DM6|1|X|U|1150
5DM6|1|X|A|1151

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L13

Chain N

50S ribosomal protein L20