IL_5DM6_126

3D structure

PDB id

5DM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGCGAAACUGGC*GUCGGUGGAG

Length

23 nucleotides

Bulged bases

5DM6|1|X|U|2130, 5DM6|1|X|G|2131, 5DM6|1|X|C|2132, 5DM6|1|X|G|2133, 5DM6|1|X|A|2134, 5DM6|1|X|A|2135, 5DM6|1|X|G|2139, 5DM6|1|X|G|2157, 5DM6|1|X|A|2158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5DM6|1|X|C|2129
5DM6|1|X|U|2130
5DM6|1|X|G|2131
5DM6|1|X|C|2132
5DM6|1|X|G|2133
5DM6|1|X|A|2134
5DM6|1|X|A|2135
5DM6|1|X|A|2136
5DM6|1|X|C|2137
5DM6|1|X|U|2138
5DM6|1|X|G|2139
5DM6|1|X|G|2140
5DM6|1|X|C|2141
*
5DM6|1|X|G|2150
5DM6|1|X|U|2151
5DM6|1|X|C|2152
5DM6|1|X|G|2153
5DM6|1|X|G|2154
5DM6|1|X|U|2155
5DM6|1|X|G|2156
5DM6|1|X|G|2157
5DM6|1|X|A|2158
5DM6|1|X|G|2159

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L1