IL_5DM8_012
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_012 not in the Motif Atlas
- Geometric match to IL_7RQB_016
- Geometric discrepancy: 0.0951
- The information below is about IL_7RQB_016
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_17136.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
5DM8|1|X|U|605
5DM8|1|X|U|606
5DM8|1|X|A|607
5DM8|1|X|A|608
5DM8|1|X|G|609
*
5DM8|1|X|C|618
5DM8|1|X|G|619
5DM8|1|X|G|620
5DM8|1|X|A|621
5DM8|1|X|G|622
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
Coloring options: