IL_5DM8_025
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UGUAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_025 not in the Motif Atlas
- Geometric match to IL_7RQB_027
- Geometric discrepancy: 0.0916
- The information below is about IL_7RQB_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_38862.1
- Basepair signature
- cWW-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5DM8|1|X|U|858
5DM8|1|X|G|859
5DM8|1|X|U|860
5DM8|1|X|A|861
5DM8|1|X|G|862
*
5DM8|1|X|C|915
5DM8|1|X|G|916
5DM8|1|X|A|917
5DM8|1|X|A|918
5DM8|1|X|G|920
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
- Chain T
- 50S ribosomal protein L27
- Chain Y
- 5S ribosomal RNA; 5S rRNA
Coloring options: