IL_5DM8_031
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCUAAG*CGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 5DM8|1|X|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_031 not in the Motif Atlas
- Geometric match to IL_4WF9_104
- Geometric discrepancy: 0.1777
- The information below is about IL_4WF9_104
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
5DM8|1|X|G|997
5DM8|1|X|C|998
5DM8|1|X|U|999
5DM8|1|X|A|1000
5DM8|1|X|A|1001
5DM8|1|X|G|1002
*
5DM8|1|X|C|1153
5DM8|1|X|G|1154
5DM8|1|X|A|1155
5DM8|1|X|A|1156
5DM8|1|X|G|1157
5DM8|1|X|C|1158
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain W
- 50S ribosomal protein L30
- Chain Y
- 5S ribosomal RNA; 5S rRNA
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