IL_5DM8_038
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUG*CACC
- Length
- 8 nucleotides
- Bulged bases
- 5DM8|1|X|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_038 not in the Motif Atlas
- Geometric match to IL_1MMS_001
- Geometric discrepancy: 0.3565
- The information below is about IL_1MMS_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_92446.2
- Basepair signature
- cWW-cWW-R-L-L
- Number of instances in this motif group
- 5
Unit IDs
5DM8|1|X|G|1059
5DM8|1|X|U|1060
5DM8|1|X|U|1061
5DM8|1|X|G|1062
*
5DM8|1|X|C|1076
5DM8|1|X|A|1077
5DM8|1|X|C|1078
5DM8|1|X|C|1079
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain F
- 50S ribosomal protein L11
- Chain J
- 50S ribosomal protein L16
- Chain S
- 50S ribosomal protein L25
Coloring options: