IL_5DM8_056

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_056 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.2185

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

5DM8|1|X|C|1475
5DM8|1|X|A|1476
5DM8|1|X|A|1477
5DM8|1|X|G|1478
*
5DM8|1|X|U|1514
5DM8|1|X|C|1515
5DM8|1|X|A|1516
5DM8|1|X|G|1517

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains