IL_5DM8_070

3D structure

PDB id

5DM8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGAG*CGAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5DM8_070 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.265

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5DM8|1|X|U|1856
5DM8|1|X|G|1857
5DM8|1|X|G|1858
5DM8|1|X|A|1859
5DM8|1|X|G|1860
*
5DM8|1|X|C|1882
5DM8|1|X|G|1883
5DM8|1|X|A|1884
5DM8|1|X|A|1885
5DM8|1|X|A|1886

Current chains

Chain X

Deinococcus radiodurans R1 chromosome 1, complete sequence

Nearby chains

Chain 0

50S ribosomal protein L1

Chain U

50S ribosomal protein L28