IL_5DM8_095
3D structure
- PDB id
- 5DM8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with orthoformimycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 5DM8|1|X|G|2780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5DM8_095 not in the Motif Atlas
- Geometric match to IL_7A0S_093
- Geometric discrepancy: 0.0602
- The information below is about IL_7A0S_093
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
5DM8|1|X|U|2636
5DM8|1|X|U|2637
5DM8|1|X|G|2638
5DM8|1|X|A|2639
5DM8|1|X|G|2640
*
5DM8|1|X|C|2774
5DM8|1|X|A|2775
5DM8|1|X|A|2776
5DM8|1|X|G|2777
5DM8|1|X|A|2778
5DM8|1|X|U|2779
5DM8|1|X|G|2780
5DM8|1|X|A|2781
5DM8|1|X|G|2782
Current chains
- Chain X
- Deinococcus radiodurans R1 chromosome 1, complete sequence
Nearby chains
- Chain B
- 50S ribosomal protein L3
- Chain G
- 50S ribosomal protein L13
Coloring options: